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CCLE数据库也单细胞转录组数据啦

数据库 文件 数据库 数据
2023-03-15 23:22:28 时间

文章标题是：《Pan-cancer single-cell RNA-seq identifies recurring programs of cellular heterogeneity》，链接是 https://www.nature.com/articles/s41588-020-00726-6 值得细读！

这个研究数据整理的非常好，可以下载的数据真多：https://singlecell.broadinstitute.org/single_cell/study/SCP542/pan-cancer-cell-line-heterogeneity#study-download

重要的应该是下面的文件 ：

CCLE_scRNAseq_github.zip    
CPM_data.txt CPM - post-QC human  
Metadata.txt    
UMIcount_data.txt

还有区分了各个细胞系的文件：

tSNE_Bile_Duct_Cancer.txt (tSNE Bile Duct Cancer)    
tSNE_Bladder_Cancer.txt (tSNE Bladder Cancer)    
tSNE_Bone_Cancer.txt (tSNE Bone Cancer)    
tSNE_Brain_Cancer.txt (tSNE Brain Cancer)    
tSNE_Breast_Cancer.txt (tSNE Breast Cancer)    
tSNE_Colon_Colorectal_Cancer.txt (tSNE Colon Colorectal Cancer)    
tSNE_Endometrial_Uterine_Cancer.txt (tSNE Endometrial Uterine Cancer)    
tSNE_Esophageal_Cancer.txt (tSNE Esophageal Cancer)    
tSNE_Fibroblast.txt (tSNE Fibroblast)    
tSNE_Gallbladder_Cancer.txt (tSNE Gallbladder Cancer)    
tSNE_Gastric_Cancer.txt (tSNE Gastric Cancer)    
tSNE_Head_and_Neck_Cancer.txt (tSNE Head and Neck Cancer)    
tSNE_Kidney_Cancer.txt (tSNE Kidney Cancer)    
tSNE_Liver_Cancer.txt (tSNE Liver Cancer)    
tSNE_Lung_Cancer.txt (tSNE Lung Cancer)    
tSNE_Neuroblastoma.txt (tSNE Neuroblastoma)    
tSNE_Ovarian_Cancer.txt (tSNE Ovarian Cancer)    
tSNE_Pancreatic_Cancer.txt (tSNE Pancreatic Cancer)    
tSNE_Prostate_Cancer.txt (tSNE Prostate Cancer)    
tSNE_Sarcoma.txt (tSNE Sarcoma)    
tSNE_Skin_Cancer.txt (tSNE Skin Cancer)    
tSNE_Thyroid_Cancer.txt (tSNE Thyroid Cancer)

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